Synthetic Data for Biomedical Applications


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Matthias Galipaud obtained his PhD in evolutionary biology in 2012 from the University of Burgundy in Dijon (France), and held postdoctoral positions as a mathematical biologist at the university of Bielefeld (Germany) and the university of Zurich, where he researched the evolutionary theories of aging and mate choice. In 2020, he became a data scientist, developing machine learning solutions for startups in Switzerland and Australia before joining the SDSC Innovation Team in November 2022.


Valerio started his career working for 7 years as a particle-physics researcher at CERN. In 2016, he moved to consulting, applying data science in several industries. First, he joined the Quant team of Ernst & Young in Geneva. Later, he created his own company, SamurAI sàrl, providing consulting services for his clients. He also has a passion for teaching very complex subjects in simple terms. That is why he particularly enjoys offering training programs to private companies and universities. Valerio joined the SDSC in May 2022 as a Principal Data Scientist with the mission of accompanying industrial partners and other institutions through their data science journey.

Presentation
Overview
Recently, synthetic data has enjoyed growing interest from the biomedical sector. Synthetic patient data helps in leveraging privacy issues. Augmenting datasets with synthetic records helps with increasing classification model training performance in the face of scarce health data and rare minority classes (e.g. rare diseases).
During this one-day workshop, organized by CHUV and SDSC, we will review available tools for synthetic data generation and use cases in the biomedical and pharmaceutical sectors.
Details
Target Audience
Experienced professionals, executives, and data scientists in the biomedical and pharmaceutical sectors wishing to acquire hands-on knowledge on synthetic data generation and usage.
As the workshop involves hands-on sessions, prior experience with the programming language Python is required. The workshop will be held in English.
Programme
Objectives
By the end of the day, participants will:
- Have a grasp of current available methods for synthetic tabular and image data generation.
- Have identified use cases and challenges of synthetic data in the biomedical and pharmaceutical sector.
- Have hands-on experience with generating synthetic data with python and evaluating its quality.
Agenda
09:00
Welcome coffee
09:30
Welcome & introduction
09:40
Synthetic data: How it works and where it is currently used
10:10
GANs, VAEs and diffusion: a deeper dive
10:55
Break
11:15
Applications in healthcare
11:45
Towards the use of synthetic data in biomedical applications: Evaluation of privacy and utility tradeoff
12:15
Lunch
13:15
Applications in the pharmaceutical industry
14:00
Hands-on (part 1): Understanding synthetic data generation (e.g. generating synthetic medical images for image classification)
14:50
Break
15:10
Hands-on (part 2): Understanding synthetic data evaluation (e.g., sharing survival data evaluating the utility and privacy of tabular synthetic data
16:40
Panel discussion
17:10
Concluding remarks, Apéro & Networking
Instructors
Jeremie Despraz, MS, Principal Data Scientist in Clinical AI, CHUV
Matthias Galipaud, PhD, Senior Data Scientist, SDSC, ETHZ
Beyrem Kaabachi, MS, Data Scientist in Health Data Privacy, CHUV
Arshjot Khehra, Data Scientist, SDSC ETHZ
Jean-Louis Raisaro, PhD, Tenure-Track Assistant Professor in Biomedical data science, CHUV
Alena Simalatsar, PhD, Assistant Professor, HES-SO
Practical Information
Price
Non-members: 150/pers
Ongoing collaborations with SDSC or BDSC: free
Availability & Registration
52 registered participants - Registration closed.
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